Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs368888295 chr2:86946700 C/T 3.89E-9 498 32.03 27.77 14.73 KM Plot
THCA rs369583645 chr10:81626617 T/C 2.26E-5 484 31.53 33.62 21.3 KM Plot
THCA rs370553584 chr10:81616584 C/T 9.58E-10 486 31.72 30.78 14.52 KM Plot
THCA rs371202091 chr11:77962788 GCTT/G 2.34E-5 500 32.48 30.63 23.57 KM Plot
THCA rs371254427 chr3:97014172 ATTCT/A 5.15E-6 502 31.47 32.82 41.97 KM Plot
THCA rs371757762 chr15:72028688 GTCTTGCTC/G 4.64E-10 497 31.53 34 20 KM Plot
THCA rs3733082 chr3:53914093 G/A 3.36E-6 496 31.68 31.85 24.75 KM Plot
THCA rs3733125 chr3:63981635 C/T 3.62E-10 488 31.5 31.67 33.97 KM Plot
THCA rs3734605 chr6:166791235 C/T 0.000119 493 33.27 32.03 31.43 KM Plot
THCA rs3740394 chr10:104634474 A/G 7.16E-14 502 31.15 36.17 32.1 KM Plot
THCA rs374658488 chr3:97006902 TAAAAAAAAAAAAGA/T 5.15E-6 502 31.47 32.82 41.97 KM Plot
THCA rs3746819 chr20:47307934 A/G 3.51E-9 502 31.67 32.03 18.22 KM Plot
THCA rs3751501 chr14:23549285 G/A 5.44E-15 498 31.7 32.35 12.97 KM Plot
THCA rs375221871 chr6:130390718 TTGCCAAAGTGTAACAG/T 2.34E-7 501 31.3 34.27 32.5 KM Plot
THCA rs3756074 chr4:74848065 G/C 4.28E-8 494 31.6 31.03 23.23 KM Plot